Fun

Evolution

Public acceptance of evolution

  • In U.S., majority now “accept”
  • Increase over last decade

Types of evidence

  • Fossil
    • Fossil dating
  • Geological
    • Where fossils are found relative to one another
    • How long it takes to form layers
  • Genetic
    • Rates of mutation
  • Anatomical
    • Homologous structures across species

Nothing in Biology Makes Sense except in the Light of Evolution

“Seen in the light of evolution, biology is, perhaps, intellectually the most satisfying and inspiring science. Without that light, it becomes a pile of sundry facts some of them interesting or curious, but making no meaningful picture as a whole.”

(Dobzhansky, 1973)

Why Gilmore thinks the theory so controversial (in the U.S.)

  • Contradicts verbatim/non-metaphorical reading of some religious texts
  • Makes humans seem less special
  • Time scales involved beyond human experience
  • Scientific method vs. other ways of knowing
  • Found in nature ≠ good for human society
  • Few negative consequences of ‘disbelief’
  • U.S. culture individualistic, skeptical, anti-elitist, anti-intellectual
  • Lower levels of religious belief among U.S. scientists
  • Politics
  • A minority of citizens support teaching evolution-only
  • Majority of classroom teachers aren’t strong advocates

A structural equation model indicates that increasing enrollment in baccalaureate-level programs, exposure to college-level science courses, a declining level of religious fundamentalism, and a rising level of civic scientific literacy are responsible for the increased level of public acceptance.

(Miller et al., 2021)

Evolution and development

Ontogenesis and phylogenesis

  • Ontogenesis
    • Development within lifetimes, history of individuals
  • Phylogenesis
    • Change across lifestimes, history of species

Ontogeny does not recapitulate phylogeny (Haeckel), but…

Source: Wikipedia

Source: Wikipedia

Nervous system architectures

How nervous systems differ

  • Body symmetry
    • radial
    • bilateral

An animal with a nerve “net”

  • Segmentation
  • Cephalization (concentration of sensory & neural structures in anterior portion of body)
  • Encasement in bone (vertebrates)
  • Centralized vs. distributed function

Cephalopods have “intelligent arms”

The essentials of biological computation

  • Ingestion
  • Defense
  • Reproduction

Information processing universals

  • Sense/detect via sensors
    • Specialize by information source/type
    • Specialize by target location
      • Interoceptive
      • Exteroceptive
  • Analyze, evaluate, decide
    • Current state
      • World
      • Organism
    • Current goals
    • Past state(s)
  • Act
    • Move body
      • Approach/avoid
      • Manipulate
      • Ingest
      • Signal
    • Change physiological state

From nerve net to nerve ring, nerve cord, and brain

(Arendt, Tosches, & Marlow, 2016)

Figure 1: Animal phylogeny. A simplified animal phylogenetic tree (showing the evolutionary history of animals), in which lines represent evolutionary diversification. The lengths of the lines are arbitrary, as they do not indicate evolutionary distance. For a brief characterization of the Anthozoa, Bilateria, Ceriantharia, Cnidaria, Ctenophora, Medusozoa and Neuralia, see the glossary. The phylogenetic position of the Ctenophora is not settled, as indicated by a question mark. The Ctenophora image is adapted with permission from Ref. 43, Wiley. The Porifera and Placozoa images are reprinted with permission from Ref. 139 (Nielsen, C. Animal Evolution: Interrelationships of the Living Phyla p31 and p39 (2012)) by the permission of Oxford University Press. The Annelida image is adapted with permission from Ref. 140, Schweizerbart Science Publishers (www.schweizerbart.de).

(Arendt, Tosches, & Marlow, 2016)

Figure 2: Comparison of neurodevelopment in the frog, annelid and sea anemone. The frog Xenopus laevis (part a), the annelid Platynereis dumerilii (part b) and the cnidarian Nematostella vectensis (part c) are depicted in their gastrula-like stages (gastrula, trochophora and planula, respectively; upper panels), intermediate developmental (neurula, metatrochophora and late planula, respectively; middle panels) and juvenile stages (tadpole, nectochaete and polyp, respectively; lower panels). Colours demarcate developmental neurogenic regions, and double-headed arrows show the apical (AP)–blastoporal (BL) axis. All views in parts a–c are lateral. At gastrula stages (upper panels), blastoporal ectodermal tissue (around the closing blastopore; red) and apical pole ectodermal tissue (violet) can be distinguished. At subsequent stages, a large part of the ectoderm — incluing the former apical and blastoporal regions — gives rise to neurogenic tissue. The neurogenic tissue comprises regions of distinct molecular identity (indicated by different colours), which will give rise to different parts of the nervous system. In the frog (part a), the neural plate (violet, red and yellow) comprises future forebrain tissue, as well as medial and lateral neural tube tissue; it is laterally bounded by developing peripheral nervous system components (blue). Similar regions are apparent in the annelid (part b), and these give rise to the brain, medial and lateral nerve cord and peripheral nervous system. As reasoned in this article, these regions also exist in the cnidarian (part c). In the frog and annelid worm, these regions are further subdivided into specific subregions by the activity of molecular organizing signals15.

(Arendt, Tosches, & Marlow, 2016)

  • Neurons and nervous systems 520-570 M years old
  • Diverse nervous systems show developmental similarities at molecular level

Vertebrate CNS organization

  • Differences in size of the cerebral cortex

Figure 1. Lateral views of the brains of some mammals to show the evolutionary development of the neocortex (gray). In the hedgehog almost the entire neocortex is occupied by sensory and motor areas. In the prosimian Galago the sensory cortical areas are separated by an area occupied by association cortex (AS). A second area of association cortex is found in front of the motor cortex. In man these anterior and posterior association areas are strongly developed. A, primary auditory cortex; AS, association cortex; Ent, entorhinal cortex; I, insula; M, primary motor cortex; PF, prefrontal cortex; PM, premotor cortex; S, primary somatosensory cortex; V, primary visual cortex. Modified with permission from Nieuwenhuys (1994).

Structural measure Non-human comparison Human
Cortical gray matter %/tot brain vol insectivores 25% 50%
Cortical gray + white mice 40% 80%
Cerebellar mass primates, mammals 10-15% 10-15%
  • Evidence for greater gray and white matter (relative to total brain volume) in human cerebral cortex
(Rakic, 2009)

Take homes

  • Brain sizes scale with body size
  • Brain sizes (more or less) scale with animal class (more or less)

Old story

  • Within mammals, human brains bigger than expected
    • Higher encephalization quotient – deviation from species-typical norm
  • Humans have larger cerebral cortical gray + white matter than comparable mammals

vs. New story

  • Does brain size/mass matter (that much)?
  • “Size matters” (brain mass) presumes similarity among brains at micro-level
  • Big (large mass) brains arise in multiple mammalian lineages
  • # of cortical neurons more important difference than brain mass
  • The primate advantage -> more cortical neurons, but not larger neurons & not more neurons in cerebellum
  • Human brain just scaled up (non-ape) primate brain

# of cortical (or in birds, pallidum) neurons predicts “cognition?”

The Human Advantage (Herculano-Houzel, 2016)

  • Brain
    • More neurons in cerebral cortex than other mammals
  • Behavior
    • Less time spent foraging
      • Higher quality/more energetically dense food
      • Higher food availability
    • Cultural factors (agriculture + cooking), see also (Wrangham, 2009)

A further human advantage

Human brain development

Timeline of milestones

Figure 1. Timeline of Key Human Neurodevelopmental Processes and Functional Milestones

(Silbereis, Pochareddy, Zhu, Li, & Sestan, 2016)

Prenatal period

Summary

  • 38 weeks from conception/fertilization on average
  • Embryonic period (weeks 1-8), fetal period (weeks 9-)
  • 3 12-13 week trimesters

Insemination

  • Can occur 3-4 days before or up to 1-2 days after…
    • Ovulation

Fertilization

  • Within ~ 24 hrs of ovulation

Implantation

  • ~ 6 days after fertilization

Early embryogenesis

Formation of neural tube (neurulation)

  • Embryonic layers: ectoderm, mesoderm, endoderm
    • Neural tube forms ~ 23 pcd (postconceptual days)
  • Neural tube closes in middle, moves toward rostral & caudal ends, closing by 29 - 30 pcd.
  • Failures of neural tube closure
    • Anencephaly (rostral neuraxis)
    • Spina bifida (caudal neuraxis)
  • Neural tube becomes
    • Ventricles & cerebral aqueduct
    • Central canal of spinal cord

  • Rostro-caudal patterning via differential growth into vesicles
    • Forebrain (prosencephalon)
    • Midbrain (mesencephalone)
    • Hindbrain (rhomencephalon)

Neurogenesis and gliogenesis

  • Neuroepithelium cell layer lines neural tube creating ventricular zone (VZ) and subventricular zone (SVZ)
    • Peri-ventricular regions home to pluripotent stem and progenitor cells that produce new neurons & glia
  • Neurogenesis (of excitatory Glu neurons) observed by 27 pcd (7 pcw; post-conceptual week)
  • Most cortical and striatal neurons generated prenatally, but
    • Cerebellum continues to ~ 18 mos

The lineage trees shown provide a simplified view of the relationship between neuroepithelial cells (NE), radial glial cells (RG) and neurons (N), without (a) and with (b) basal progenitors (BP) as cellular intermediates in the generation of neurons. They also show the types of cell division involved.

(Götz & Huttner, 2005)

  • Areas in adult human brain that generate new neurons
    • hippocampus
    • striatum
    • olfactory bulb (minimally)
    • weak evidence for substantial neurogenesis in adult cerebral cortex
  • Neural stem cells
    • Undergo symmetric & asymmetric cell division
    • Generate glia, neurons, and basal progenitor cells

Radial glia and cell migration

Radial unit hypothesis

Axon growth cone

  • Chemoattractants
    • e.g., Nerve Growth Factor (NGF)
  • Chemorepellents
  • Receptors in growth cone detect chemical gradients

Glia migrate, too

Differentiation

Infancy & Early Childhood

Synaptogenesis

  • Begins prenatally (~ 18 pcw)
  • Peak density ~ 15 mos postnatal
  • Spine density in DLPFC ~ 7 yrs postnatal
  • 700K synapses/s on average

Proliferation, pruning

  • Early proliferation
  • Later pruning
  • Rates, peaks differ by area

Apoptosis

  • Programmed cell death
  • 20-80%, varies by area
  • Spinal cord >> cortex
  • Quantity of nerve growth factors (NGF) influences

Synaptic rearrangement

  • Progressive phase: growth rate >> loss rate
  • Regressive phase: growth rate << loss rate

Myelination

  • Neonatal brain largely unmyelinated
  • Gradual myelination, peaks in mid-20s
  • Non-uniform pattern
    • Spinal cord before brain
    • Sensory before motor

Structural/morphometric development

Synaptogenesis

Myelination across human development

Networks in the brain

“Control” networks

non-“control” networks

The “development” of developmental connectomics

Myelination changes “network” properties

Synaptic rearrangment, myelination change cortical thickness

Video depictions

Right hemisphere

Left hemisphere

Superior

Inferior

Changes in brain energetics (glucose utilization)

Gene expression across development

a, Comparison between DCX expression in HIP and the density of DCX-immunopositive cells in the human dentate gyrus36. b, Comparison between transcriptome-based dendrite development trajectory in DFC and Golgi-method-based growth of basal dendrites of layer 3 (L3) and 5 (L5) pyramidal neurons in the human DFC41. c, Comparison between transcriptome-based synapse development trajectory in DFC and density of DFC synapses calculated using electron microscopy42. For b and c, PC1 for gene expression was plotted against age to represent the developmental trajectory of genes associated with dendrite (b) or synapse (c) development. Independent data sets were centred, scaled and plotted on a logarithmic scale. d, PC1 value for the indicated sets of genes (expressed as percentage of maximum) plotted against age to represent general trends and regional differences in several neurodevelopmental processes in NCX, HIP and CBC.

Summary of developmental milestones

Prenatal

  • Neuro- and gliogenesis
  • Migration
  • Synaptogenesis begins
  • Differentiation
  • Apoptosis
  • Myelination begins
  • Infant gene expression ≠ Adult

Postnatal

  • Synaptogenesis
  • Cortical expansion, activity-dependent change
  • Then cubic, quadratic, or linear declines in cortical thickness
  • Myelination
  • Connectivity changes (esp within networks)
  • Prolonged period of postnatal/pre-reproductive development (Konner, 2011)

How brain development clarifies anatomical structure

3-4 weeks

Source: Swanson

Source: Swanson

~4 weeks

6 weeks

Beyond 6+ weeks

Organization of the brain

Major division Ventricular Landmark Embryonic Division Structure
Forebrain Lateral Telencephalon Cerebral cortex
Basal ganglia
Hippocampus, amygdala
Third Diencephalon Thalamus
Hypothalamus
Midbrain Cerebral Aqueduct Mesencephalon Tectum, tegmentum
Hindbrain 4th Metencephalon Cerebellum, pons
Mylencephalon Medulla oblongata

From structural development to functional development

Figure 3: Three accounts of the neural basis of an advance in behavioural abilities in infants. a | A maturational view in which the neuroanatomical maturation of one region, in this case the dorsolateral prefrontal cortex (DLPC), allows new behavioural abilities to emerge. Specifically, maturation of DLPC has been associated with successful performance in the object retrieval task (Fig. 1a)50. Note that although the task itself involves activity in several regions, it is thought to be maturation of only one of these, the DLPC, that results in changed behaviour. b | An interactive specialization view in which the onset of a new behavioural ability is due to changes in the interactions between several regions that were already partially active. In this hypothetical illustration, it is suggested that changes in the interactions between DLPC, parietal cortex and cerebellum might give rise to successful performance in the object retrieval paradigm. In contrast to the maturational view, it is refinement of the connectivity between regions, rather than within a single region, that is important. According to this view, regions adjust their functionality together to allow new computations. c | A skill-learning model, in which the pattern of activation of cortical regions changes during the acquisition of new skills throughout the lifespan. In the example illustrated there is decreasing activation of DLPC and medial frontal cortex (pre-supplementary motor area), accompanied by increasing activation of more posterior regions (such as intraparietal sulcus), as human adults perform a visuomotor sequence learning task77. It is suggested that similar changes might occur during the acquisition of new skills by infants. These three accounts are not necessarily mutually exclusive. (Johnson, 2001)

References

Arendt, D., Tosches, M. A., & Marlow, H. (2016). From nerve net to nerve ring, nerve cord and brain — evolution of the nervous system. Nature Reviews Neuroscience, 17(1), 61–72. https://doi.org/10.1038/nrn.2015.15
Baumann, N., & Pham-Dinh, D. (2001). Biology of oligodendrocyte and myelin in the mammalian central nervous system. Physiological Reviews, 81(2), 871–927. https://doi.org/10.1152/physrev.2001.81.2.871
Cao, M., Huang, H., & He, Y. (2017). Developmental connectomics from infancy through early childhood. Trends in Neuroscience, 40(8), 494–506. https://doi.org/10.1016/j.tins.2017.06.003
Chi, J. G., Dooling, E. C., & Gilles, F. H. (1977). Gyral development of the human brain. Ann. Neurol., 1(1), 86–93. https://doi.org/10.1002/ana.410010109
DeFelipe, J., Alonso-Nanclares, L., & Arellano, J. I. (2002). Microstructure of the neocortex: Comparative aspects. Journal of Neurocytology, 31(3-5), 299–316. https://doi.org/10.1023/a:1024130211265
Dobzhansky, T. (1973). Nothing in biology makes sense except in the light of evolution. The American Biology Teacher, 35(3), pp. 125–129. Retrieved from http://www.jstor.org/stable/4444260
Gogtay, N., Giedd, J. N., Lusk, L., Hayashi, K. M., Greenstein, D., Vaituzis, A. C., … Thompson, P. M. (2004). Dynamic mapping of human cortical development during childhood through early adulthood. Proc. Natl. Acad. Sci. U. S. A., 101(21), 8174–8179. https://doi.org/10.1073/pnas.0402680101
Götz, M., & Huttner, W. B. (2005). The cell biology of neurogenesis. Nat. Rev. Mol. Cell Biol., 6(10), 777–788. https://doi.org/10.1038/nrm1739
Hagmann, P., Sporns, O., Madan, N., Cammoun, L., Pienaar, R., Wedeen, V. J., … Grant, P. E. (2010). White matter maturation reshapes structural connectivity in the late developing human brain. Proceedings of the National Academy of Sciences, 107(44), 19067–19072. https://doi.org/10.1073/pnas.1009073107
Herculano-Houzel, S. (2012). The remarkable, yet not extraordinary, human brain as a scaled-up primate brain and its associated cost. Proceedings of the National Academy of Sciences of the United States of America, 109 Suppl 1, 10661–10668. https://doi.org/10.1073/pnas.1201895109
Herculano-Houzel, S. (2016). The human advantage: A new understanding of how our brain became remarkable. MIT Press. Retrieved from https://market.android.com/details?id=book-DMqpCwAAQBAJ
Herculano-Houzel, S. (2017). Numbers of neurons as biological correlates of cognitive capability. Current Opinion in Behavioral Sciences, 16(Supplement C), 1–7. https://doi.org/10.1016/j.cobeha.2017.02.004
Hofman, M. A. (2014). Evolution of the human brain: When bigger is better. Frontiers in Neuroanatomy, 8. https://doi.org/10.3389/fnana.2014.00015
Irimia, A., & Van Horn, J. (2014). Systematic network lesioning reveals the core white matter scaffold of the human brain. Frontiers in Human Neuroscience, 8, 51. https://doi.org/10.3389/fnhum.2014.00051
Johnson, M. H. (2001). Functional brain development in humans. Nat. Rev. Neurosci., 2(7), 475–483. https://doi.org/10.1038/35081509
Kang, H. J., Kawasawa, Y. I., Cheng, F., Zhu, Y., Xu, X., Li, M., … Šestan, N. (2011). Spatio-temporal transcriptome of the human brain. Nature, 478(7370), 483–489. https://doi.org/10.1038/nature10523
Kety, S. S., & Schmidt, C. F. (1948). The Nitrous OXIDE METHOD FOR THE QUANTITATIVE DETERMINATION OF CEREBRAL BLOOD FLOW IN MAN: THEORY, PROCEDURE AND NORMAL VALUES. The Journal of Clinical Investigation, 27(4), 476–483. https://doi.org/10.1172/JCI101994
Knickmeyer, R. C., Gouttard, S., Kang, C., Evans, D., Wilber, K., Smith, J. K., … Gilmore, J. H. (2008). A structural MRI study of human brain development from birth to 2 years. J. Neurosci., 28(47), 12176–12182. https://doi.org/10.1523/JNEUROSCI.3479-08.2008
Konner, M. (2011). The Evolution of Childhood. Belknap Press of Harvard University Press. Retrieved from http://www.hup.harvard.edu/catalog.php?isbn=9780674062016
Kuzawa, C. W., Chugani, H. T., Grossman, L. I., Lipovich, L., Muzik, O., Hof, P. R., … Lange, N. (2014). Metabolic costs and evolutionary implications of human brain development. Proc. Natl. Acad. Sci. U. S. A., 111(36), 13010–13015. https://doi.org/10.1073/pnas.1323099111
Marner, L., Nyengaard, J. R., Tang, Y., & Pakkenberg, B. (2003). Marked loss of myelinated nerve fibers in the human brain with age. The Journal of Comparative Neurology, 462(2), 144–152. https://doi.org/10.1002/cne.10714
Miller, J. D., Scott, E. C., Ackerman, M. S., Laspra, B., Branch, G., Polino, C., & Huffaker, J. S. (2021). Public acceptance of evolution in the united states, 1985-2020. Public Understanding of Science, 9636625211035919. https://doi.org/10.1177/09636625211035919
Miller, J. D., Scott, E. C., & Okamoto, S. (2006). Public acceptance of evolution. SCIENCE-NEW YORK THEN WASHINGTON-, 313(5788), 765. https://doi.org/10.1126/science.1126746
Northcutt, R. G. (2002). Understanding vertebrate brain evolution. Integr. Comp. Biol., 42(4), 743–756. https://doi.org/10.1093/icb/42.4.743
Petrican, R., Taylor, M. J., & Grady, C. L. (2017). Trajectories of brain system maturation from childhood to older adulthood: Implications for lifespan cognitive functioning. Neuroimage. https://doi.org/10.1016/j.neuroimage.2017.09.025
Rakic, P. (2009). Evolution of the neocortex: A perspective from developmental biology. Nature Reviews Neuroscience, 10(10), 724–735.
Shaw, P., Kabani, N. J., Lerch, J. P., Eckstrand, K., Lenroot, R., Gogtay, N., … Others. (2008). Neurodevelopmental trajectories of the human cerebral cortex. Journal of Neuroscience, 28(14), 3586–3594. https://doi.org/10.1523/JNEUROSCI.5309-07.2008
Silbereis, J. C., Pochareddy, S., Zhu, Y., Li, M., & Sestan, N. (2016). The cellular and molecular landscapes of the developing human central nervous system. Neuron, 89(2), 248–268. https://doi.org/10.1016/j.neuron.2015.12.008
Wrangham, R. (2009). Catching fire: How cooking made us human. Basic Books. Retrieved from https://market.android.com/details?id=book-ebEOupKz-rMC