Schedule

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Week 1

Thursday, August 27

• Topics
  • Structure of the course
  • The connectome and beyond
  • Does neuroscience need behavior? Does behavioral science need the brain?
• Read/Watch
  • Swanson, L. W., & Lichtman, J. W. (2016). From Cajal to Connectome and Beyond. Annual Review of Neuroscience, 39, 197–216. https://doi.org/10.1146/annurev-neuro-071714-033954. PDF. Annotable PDF
  • Krakauer, J. W., Ghazanfar, A. A., Gomez-Marin, A., MacIver, M. A., & Poeppel, D. (2017). Neuroscience needs behavior: Correcting a reductionist bias. Neuron, 93(3), 480–490. https://dx.doi.org/10.1016/j.neuron.2016.12.041. pdf. Annotable PDF

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Week 2

Thursday, September 3

• Topics
  • Methods in neuroscience
• Read/Watch
  • Mendoza-Halliday, D. (2019). Neuroscience methods tutorial. https://youtu.be/iHthMSN65bA.
  • Cognitive Psychology and Cognitive Neuroscience/Behavioural and Neuroscience Methods. https://en.wikibooks.org/wiki/Cognitive_Psychology_and_Cognitive_Neuroscience/Behavioural_and_Neuroscience_Methods
  • (Optional) Cohen, M. X. (2017). Where Does EEG Come From and What Does It Mean? Trends in Neurosciences, 40(4), 208–218. Retrieved from https://dx.doi.org/10.1016/j.tins.2017.02.004
  • (Optional) Logothetis, N. K., Pauls, J., Augath, M., Trinath, T., & Oeltermann, A. (2001). Neurophysiological investigation of the basis of the fMRI signal. Nature, 412(6843), 150–157. Retrieved January 20, 2016, from https://www.nature.com/nature/journal/v412/n6843/abs/412150a0.html
  • (Optional) Hillman, E. M. C. (2014). Coupling mechanism and significance of the BOLD signal: a status report. Annual Review of Neuroscience, 37, 161–181. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-071013-014111.

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Week 3

Thursday, September 10

• Topics
  • Wrap-up on methods
  • Cellular neuroscience (anatomy)
  • Cellular neuroscience (resting potential)
  • Cellular neuroscience (action potential)
• Read/Watch
  • BW¹ 2:36-51.
  • Read BW 3:61-78.
  • Read BW 3:78-92.
  • Zeng, H., & Sanes, J. R. (2017). Neuronal cell-type classification: challenges, opportunities and the path forward. Nature Reviews Neuroscience. Retrieved from https://dx.doi.org/10.1038/nrn.2017.85.
  • Oliveira, J. F., Sardinha, V. M., Guerra-Gomes, S., Araque, A., & Sousa, N. (2015). Do stars govern our actions? Astrocyte involvement in rodent behavior. Trends in Neurosciences, 38(9), 535–549. Retrieved from https://dx.doi.org/10.1016/j.tins.2015.07.006.

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Week 4

Thursday, September 17

• Topics
  • Cellular neuroscience (resting potential)
  • Cellular neuroscience (action potential)

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Week 5

Thursday, September 24

• Topics
  • Neuroanatomy
• Read/Watch
• Quiz 1. Take home. Due at start of class on Thursday, October 1, 2020.

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Week 6

Thursday, October 1

• Topic
  • Neurochemistry
  • Hormones
  • Brain/gut connection
• Read/Watch
  • Read BW: 4:95-100.
  • Read BW 4:101-130.
  • Read BW 5:125-154.
  • Read BW 5:131-159.
  • (Optional) Sarkar, A., Lehto, S. M., Harty, S., Dinan, T. G., Cryan, J. F., & Burnet, P. W. J. (2016). Psychobiotics and the manipulation of bacteria-gut-brain signals. Trends in Neurosciences, 39(11), 763–781. Retrieved from https://dx.doi.org/10.1016/j.tins.2016.09.002.
• Quiz 1 due. Email it to me.

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Week 7

Thursday, October 8

• Topics
  • Evolution of the nervous system
  • Development of the human brain
• Reading
  • Read BW 6 & 7.
  • Optional Hofman 2014.

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Week 8

Thursday, October 15

• Topics
  • Development of the human brain
• Read/Watch
  • Rakic, P. (2009). Evolution of the neocortex: a perspective from developmental biology. Nature Reviews Neuroscience, 10(10), 724–735. Retrieved October 5, 2015, from https://www.nature.com/nrn/journal/v10/n10/abs/nrn2719.html.
  • Cao, M., Huang, H., & He, Y. (2017). Developmental connectomics from infancy through early childhood. Trends in Neurosciences, 40(8), 494–506. Retrieved from https://dx.doi.org/10.1016/j.tins.2017.06.003.

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Week 9

Thursday, October 22

• Topics
  • Perception.
• Read/Watch
  • Read BW 8:230-241.
  • Hubel, D. H. (1982). Exploration of the primary visual cortex, 1955-78. Nature, 299(5883), 515–524. https://www.ncbi.nlm.nih.gov/pubmed/6750409.
  • Murray, M. M., Lewkowicz, D. J., Amedi, A., & Wallace, M. T. (2016). Multisensory Processes: A Balancing Act across the Lifespan. Trends in Neurosciences, 39(8), 567–579. Retrieved July 28, 2016, from https://www.sciencedirect.com/science/article/pii/S0166223616300480.

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Week 10

Thursday, October 29

• Topics
  • Action.
• Read/Watch
  • Read BW 10: 301:335, 11: 341:368.
  • Nielsen, J. B. (2016). Human spinal motor control. Annual Review of Neuroscience, 39, 81–101. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-070815-013913
  • Shenoy, K. V., Sahani, M., & Churchland, M. M. (2013). Cortical control of arm movements: A dynamical systems perspective. Annual Review of Neuroscience, 36, 337–359. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-062111-150509.
• Quiz 2 distributed. Due by 5:00 PM on 11/05.

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Week 11

Thursday, November 5

• Topics
  • Cognition & language. Read BW 19.
  • Learning & memory. Read BW 17.
• Read/Watch
  • Squire, L. R., & Wixted, J. T. (2011). The cognitive neuroscience of human memory since H.M. Annual Review of Neuroscience, 34, 259–288. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-061010-113720.
  • Hagoort, P., & Indefrey, P. (2014). The neurobiology of language beyond single words. Annual Review of Neuroscience, 37, 347–362. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-071013-013847.
• Quiz 2 due

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Week 12

Thursday, November 12

• Topics
  • Fear, stress, & reward.
• Read/Watch
  • Read BW 15.
  • Pellman, B. A., & Kim, J. J. (2016). What can ethobehavioral studies tell us about the brain’s fear system? Trends in Neurosciences, 39(6), 420–431. Retrieved from https://dx.doi.org/10.1016/j.tins.2016.04.001
  • Hu, H. (2016). Reward and aversion. Annual Review of Neuroscience, 39, 297–324. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-070815-014106
  • Musazzi, L., Tornese, P., Sala, N., & Popoli, M. (2017). Acute or chronic? A stressful question. Trends in Neurosciences. Retrieved from https://dx.doi.org/10.1016/j.tins.2017.07.002
  • Watabe-Uchida, M., Eshel, N., & Uchida, N. (2017). Neural circuitry of reward prediction error. Annual Review of Neuroscience, 40, 373–394. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-072116-031109.

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Week 13

Thursday, November 19

• Topics
  • Disorder and Disease.
• Read/Watch
  • Read BW 16.
  • Hunt, M. J., Kopell, N. J., Traub, R. D., & Whittington, M. A. (2017). Aberrant network activity in schizophrenia. Trends in Neurosciences, 40(6), 371–382. Retrieved from https://dx.doi.org/10.1016/j.tins.2017.04.003.
  • Pawluski, J. L., Lonstein, J. S., & Fleming, A. S. (2017). The neurobiology of postpartum anxiety and depression. Trends in Neurosciences, 40(2), 106–120. Retrieved from https://dx.doi.org/10.1016/j.tins.2016.11.009.
  • Namkung, H., Kim, S.-H., & Sawa, A. (2017). The insula: An underestimated brain area in clinical neuroscience, psychiatry, and neurology. Trends in Neurosciences, 40(4), 200–207. Retrieved from https://dx.doi.org/10.1016/j.tins.2017.02.002.
  • Volk, L., Chiu, S.-L., Sharma, K., & Huganir, R. L. (2015). Glutamate synapses in human cognitive disorders. Annual Review of Neuroscience, 38, 127–149. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-071714-033821.
• Quiz 3 distributed. Due at start of class on Thursday, December 3, 2019.

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Thanksgiving Break, November 23 - 27, 2020

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Week 14

Thursday, December 3

• Topics
  • Networks all the way down
• Read/Watch
  • Bullmore, E., & Sporns, O. (2009). Complex brain networks: Graph theoretical analysis of structural and functional systems. Nature Reviews Neuroscience, 10(3), 186–198. https://doi.org/10.1038/nrn2575.
  • Raichle, M. E. (2015). The brain’s default mode network. Annual Review of Neuroscience, 38, 433–447. Retrieved from https://dx.doi.org/10.1146/annurev-neuro-071013-014030.
  • Bargmann, C. I. (2012). Beyond the connectome: how neuromodulators shape neural circuits. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, 34(6), 458–465. https://doi.org/10.1002/bies.201100185
  • Kopell, N. J., Gritton, H. J., Whittington, M. A., & Kramer, M. A. (2014). Beyond the connectome: the dynome. Neuron, 83(6), 1319–1328. https://doi.org/10.1016/j.neuron.2014.08.016
• Quiz 3 due.

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Week 15

Thursday, December 10

• Topics
  • Reproducibility in neuroscience
• Readings
  • Kass, R. (2020). Exaggerated Claims Undermine Science by Ignoring the Scientific Method. https://youtu.be/PwCyvSDkUCY
  • Botvinik-Nezer, R., et al. (2020). Variability in the analysis of a single neuroimaging dataset by many teams. Nature, 582(7810): 84-88. https://doi.org/10.1038/s41586-020-2314-9.
  • Gilmore, R. O., Diaz, M. T., Wyble, B. A., & Yarkoni, T. (2017). Progress toward openness, transparency, and reproducibility in cognitive neuroscience. Annals of the New York Academy of Sciences. Retrieved from https://dx.doi.org/10.1111/nyas.13325.
  • Gorgolewski, K. J., & Poldrack, R. A. (2016). A practical guide for improving transparency and reproducibility in neuroimaging research. PLoS Biology, 14(7), e1002506. Retrieved October 2, 2016, from https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002506.

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Week 16

Wednesday, December 16, 2020

• Final papers due by 5:00 pm

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1. BW refers to the Behavioral Neuroscience text by Breedlove and Watson.↩︎

Copyright © Rick O. Gilmore